Study on structural clusters created by water docking on the introgen base groups of DNA using semi-quantum relaxation method.

Abstract

The paper deals with studying on the ability of docking H20 on nitrogen base groups of DNA by Semi-Quantum Relaxation method. The structural clusters were defined. The lengths of hydrogen bonds calculated and the places in nitrogen base groups where H20 docked is are in a very good agreement with the references. It is proving that the algorithm is suitable and it can be extended to study different ligands docking.